CDS

Accession Number TCMCG007C28928
gbkey CDS
Protein Id XP_009142031.1
Location complement(join(20479080..20479400,20479754..20480140,20480210..20480419))
Gene LOC103865920
GeneID 103865920
Organism Brassica rapa

Protein

Length 305aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009143783.3
Definition putative E3 ubiquitin-protein ligase SINAT1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category O
Description E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K04506        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko04013        [VIEW IN KEGG]
ko04115        [VIEW IN KEGG]
ko04120        [VIEW IN KEGG]
ko04310        [VIEW IN KEGG]
map04013        [VIEW IN KEGG]
map04115        [VIEW IN KEGG]
map04120        [VIEW IN KEGG]
map04310        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010506        [VIEW IN EMBL-EBI]
GO:0016241        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031329        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044087        [VIEW IN EMBL-EBI]
GO:0044088        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0061630        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1902115        [VIEW IN EMBL-EBI]
GO:2000785        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCTCCTCCTGGTGGCAATACTTTCAAAGAATCCAACTCAACAGGCTTAGATTATGAGGTTAAGATGTCTAAAGTGGAGACTAACAACAAACCAGCAAGATCAGCTAGTGTCTCCTTTAGAAAATACGGAATCCATTCAAGCAATGGTGTCTACGAGCTTCTCGAATGTCTAGCTTGTACAAATCTTATGTATCCTCCAATTTTTCAGTGCCCTAACGGCCACACACTGTGCTCAACCTGCAAACTGAAAGTGCACAACACATGCCCTACATGCCGCTACGAGCTCGGCAACATAAGATGCTTGGCGCTCGAGAAAGTTGCTGAATCGTTAGAAGTTCCGTGCCGGTACCAAAGTCTAGGGTGTCATGACATTTTCCCGTACTACAGCAAGCTCAAGCACGAGCAGCACTGCAGGTTTCGATCTTACAACTGTCCTTACGCTGGCTCTGAGTGTTCGGTGGCCGGTGATATTCAAACTCTTGTTGACCATCTCAAAGATGATCATAAAGTCGATATGCATGATGGTTGCACCTTCAACCACCGTTATGTCAAGTCAAATCCACTCGAGGTTGAGAATGCTACGTGGATGCTTACGGTGTTCAACTGTTTTGGAAGACAGTTCTGCTTACACTTTGAGGCGTTTCAGCTTGGGACGGCACCAGTGTACATGGCCTTTCTGCGTTTCATGGGAGACGAGAAGGAGGCTAAGAAGTTTAGTTACAGTTTGGAAGTTGGAGCTCACAGCTGTAAACTGACTTGGCAAGGCATTCCTAGAAGTATCAGAGACAGTCACAGGAAAGTCCGTGATAGTCAGGACGGACTGATCATCCCTAGAAACATGGCTTTGTATTTTTCCGGTAGTGATAAAGAAGAGCTTAAGCTGCGAGTTACTGGGAGGATTTGGAAAGAAGAATAG
Protein:  
MAPPGGNTFKESNSTGLDYEVKMSKVETNNKPARSASVSFRKYGIHSSNGVYELLECLACTNLMYPPIFQCPNGHTLCSTCKLKVHNTCPTCRYELGNIRCLALEKVAESLEVPCRYQSLGCHDIFPYYSKLKHEQHCRFRSYNCPYAGSECSVAGDIQTLVDHLKDDHKVDMHDGCTFNHRYVKSNPLEVENATWMLTVFNCFGRQFCLHFEAFQLGTAPVYMAFLRFMGDEKEAKKFSYSLEVGAHSCKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNMALYFSGSDKEELKLRVTGRIWKEE